PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.091670.1
Common NameCsa_2G021550, LOC101212782
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 318aa    MW: 35515.2 Da    PI: 5.9358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.091670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13113164155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cucsa.091670.1 113 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164
                     79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.57E-14111168No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16112173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALEAVVFSQ DPLCYNGSKD LYSLLGGGIW ANGGFEYPEI PHDFPENQTE NFPFEDWNSS  60
SSVFVPNPSP EAADSRNGLL KPPLEAESIT PHPIRPRKRR PKSRKNKEEI ENQRMTHIAV  120
ERNRRKQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEQQVQVL STVETKGKIN  180
NSAEGCCNSN SNSNSKIPFT EFFSFPQFKA MEGCSLVSEN ETQCSSTVAD IEVTMVENHA  240
NLKIRSKRRP KQILKIVAGL HSLSLSVLHL NISTINQIVL YCLSVKVEDD CKLSSVDEIA  300
SALHQLLSRI EEDSLMN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139191.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A0A0LIK90.0A0A0A0LIK9_CUCSA; Helix-loop-helix-like protein
STRINGGLYMA19G42520.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-64bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]